First name
John
Middle name
A
Last name
Germiller

Title

Association of Diet Patterns and Post-Operative Tympanostomy Tube Otorrhea: A Pilot Study.

Year of Publication

2023

Number of Pages

Date Published

03/2023

ISSN Number

1531-4995

Abstract

OBJECTIVE: The objective of this study was to explore diet patterns in children with tympanostomy tube placement (TTP) complicated by postoperative tympanostomy tube otorrhea.

STUDY DESIGN: Cross-sectional survey and retrospective cohort study.

METHODS: Caregivers of children (0-12 years old), at a tertiary-care pediatric hospital who underwent TTP within 6 months to 2 years prior to enrollment were included. Children with a history of Down syndrome, cleft palate, craniofacial syndromes, known immunodeficiency, or a non-English-speaking family were excluded. Our primary outcome variable was the number of otorrhea episodes. The primary predictor was diet patterns, particularly dessert intake, which was captured through a short food questionnaire.

RESULTS: A total of 286 participants were included in this study. The median age was 1.8 years (IQR, 1.3, 2.9). A total of 174 (61%) participants reported at least one episode of otorrhea. Children who consumed dessert at least two times per week had a higher risk of otorrhea compared to children who consumed one time per week or less (odds ratio [OR], 3.22, 95% Confidence Interval [CI]: 1.69, 6.12). The odds ratio increase continued when considering more stringent criteria for otorrhea (multiple episodes or one episode occurring 4 weeks after surgery), with a 2.33 (95% CI: 1.24, 4.39) higher odds of otorrhea in children with dessert intake at least 2 times per week.

CONCLUSIONS: Our pilot data suggest that episodes of otorrhea among children with TTP were associated with more frequent dessert intake. Future studies using prospectively administered diet questionnaires are necessary to confirm these findings.

LEVEL OF EVIDENCE: 4 Laryngoscope, 2023.

DOI

10.1002/lary.30672

Alternate Title

Laryngoscope

PMID

36960887
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Title

Perspective on the Development of a Large-Scale Clinical Data Repository for Pediatric Hearing Research.

Year of Publication

2020

Number of Pages

231-238

Date Published

2020 Mar/Apr

ISSN Number

1538-4667

Abstract

<p>The use of "big data" for pediatric hearing research requires new approaches to both data collection and research methods. The widespread deployment of electronic health record systems creates new opportunities and corresponding challenges in the secondary use of large volumes of audiological and medical data. Opportunities include cost-effective hypothesis generation, rapid cohort expansion for rare conditions, and observational studies based on sample sizes in the thousands to tens of thousands. Challenges include finding and forming appropriately skilled teams, access to data, data quality assessment, and engagement with a research community new to big data. The authors share their experience and perspective on the work required to build and validate a pediatric hearing research database that integrates clinical data for over 185,000 patients from the electronic health record systems of three major academic medical centers.</p>

DOI

10.1097/AUD.0000000000000779

Alternate Title

Ear Hear

PMID

31408044
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Title

Temporal bone radiology report classification using open source machine learning and natural langue processing libraries.

Year of Publication

2016

Number of Pages

65

Date Published

2016 Jun 06

ISSN Number

1472-6947

Abstract

<p><strong>BACKGROUND: </strong>Radiology reports are a rich resource for biomedical research. Prior to utilization, trained experts must manually review reports to identify discrete outcomes. The Audiological and Genetic Database (AudGenDB) is a public, de-identified research database that contains over 16,000 radiology reports. Because the reports are unlabeled, it is difficult to select those with specific abnormalities. We implemented a classification pipeline using a human-in-the-loop machine learning approach and open source libraries to label the reports with one or more of four abnormality region labels: inner, middle, outer, and mastoid, indicating the presence of an abnormality in the specified ear region.</p>

<p><strong>METHODS: </strong>Trained abstractors labeled radiology reports taken from AudGenDB to form a gold standard. These were split into training (80&nbsp;%) and test (20&nbsp;%) sets. We applied open source libraries to normalize and convert every report to an n-gram feature vector. We trained logistic regression, support vector machine (linear and Gaussian), decision tree, random forest, and naïve Bayes models for each ear region. The models were evaluated on the hold-out test set.</p>

<p><strong>RESULTS: </strong>Our gold-standard data set contained 726 reports. The best classifiers were linear support vector machine for inner and outer ear, logistic regression for middle ear, and decision tree for mastoid. Classifier test set accuracy was 90&nbsp;%, 90&nbsp;%, 93&nbsp;%, and 82&nbsp;% for the inner, middle, outer and mastoid regions, respectively. The logistic regression method was very consistent, achieving accuracy scores within 2.75&nbsp;% of the best classifier across regions and a receiver operator characteristic area under the curve of 0.92 or greater across all regions.</p>

<p><strong>CONCLUSIONS: </strong>Our results indicate that the applied methods achieve accuracy scores sufficient to support our objective of extracting discrete features from radiology reports to enhance cohort identification in AudGenDB. The models described here are available in several free, open source libraries that make them more accessible and simplify their utilization as demonstrated in this work. We additionally implemented the models as a web service that accepts radiology report text in an HTTP request and provides the predicted region labels. This service has been used to label the reports in AudGenDB and is freely available.</p>

DOI

10.1186/s12911-016-0306-3

Alternate Title

BMC Med Inform Decis Mak

PMID

27267768
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